MooersLab's Repositories

Daily writings for 2025

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Slides show presentation on August 3, 2021 at the American Crystallographic Association annual meeting.

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Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association

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Slides and videos for "Voice computing for biological crystallography"

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acronymstex2yaml

Python script to convert acronyms.tex into acronym.yml for use with R's acronymsdown package.

⭐ 1 🌐 Public

aimless-summary-table-extraction

X-ray diffraction data processing: extract summary table in aimless log file

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annotated-bibliography-org

Template for making annotated bibliography in org-mode

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annotatedBibliography

Annotated bibliography template in LaTeX for specific writing projects

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artificial-intelligence-voice-in

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Exploratory analysis of Bayesian models with Python

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Library of voice-triggered code snippets for arviz using Voice In Jupyter Notebooks

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barebones-modulated-annotated-bibliography-orgmode

A slim template for the building an illustrated and modular annotated biblography in org-mode.

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This is a bare bones LaTeX template document.

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bash-whisper-transcription

Bash function to ease the transcription of audio files with OpenAI's whisper.

⭐ 1 🌐 Public

bashFunctions4oscer

Bash functions to ease work on supercomputer using SLURM

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bayesian-data-analysis-voice-in

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beamer-slides-el

⭐ 1 🌐 Public

BerlinEmacsAugust2022

*Document preparation with LATEX in Emacs*

⭐ 4 🌐 Public

bib2item3 converts a bib file into a txt file with bibitems.

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bibtex-splitter-el

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biological-crystallography-voice-in

Voice commands about biological crystallography for the speech recognition software Voice In

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Book template in org-mode.

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Voice-triggered code snippets for the computational crystallography toolbox (cctbx)

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Landing page for a number of cctbx related snippet libraries.

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cctbxsnips-Atom

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cctbxsnips-Emacs

cctbxsnips for the Emacs yasnippet package

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cctbxsnips-neosnippets

CCTBX snippets for neosnippets package for Vim and NeoVim

⭐ 2 🌐 Public

cctbxsnips-snipmate

⭐ 1 🌐 Public

cctbxsnips-SublimeText3

snippets for CCTBX formatted for use with Sublime Text 3

⭐ 3 🌐 Public

cctbxsnips-Ultisnips

cctbx-snips for the ultisnips package for Vim and NeoVim

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chatbot-reformat-my-transcript

Prompts to reformat text from audio file transcription or direct speech-to-text.

⭐ 1 🌐 Public

cmdstanpy-voice-in

The Voice triggered Snippets of cmdstan code for use with Voice In Plus

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colabcctbxsnips

CCTBX code fragment library in colab snippet notebook.

⭐ 1 🌐 Public

colabOpenSourcePyMOLpySnips

Code snippets for colab-notebooks running open-source PyMOL

⭐ 4 🌐 Public

colabpymolpysnips

Library of PyMOL Python snippets for Google Colab.

⭐ 6 🌐 Public

compile-emacs-29

Protocols for compiling GNU Emacs version 29 from source code.

⭐ 1 🌐 Public

Package.el dependent config.org file for Emacs

⭐ 4 🌐 Public

count-lines-of-code

Python and bash functions for counting lines of code

⭐ 1 🌐 Public

crafted-emacs-config

Blaine's configuration file for crafted-emacs--a smart framework on which to build

⭐ 1 🌐 Public

create-new-writing-project

Protocol for creating a new writiing project and putting it under version control with a private repository

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cryoem-voice-in

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CryoEM weblinks and additional

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cryosolution-generation

Excel workbook to compute cryosolutions for the cryopreservation of protein crystals

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crystal-score-key

Key for scoring crystallization results on a 21 score scale.

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crystallization-observation-record-24wells

Score sheet for recording observations and post crystallization treatments of crystals

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Curve-fitting-software

A collection of links to free and proprietary curve fitting software.

⭐ 11 🌐 Public

design-of-experiments-voice-in

Design of experiments related commands for Voice-In speech-to-text software

⭐ 1 🌐 Public

diary2022inLaTeX

Dairy for 2022 in LaTeX

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diary2023inLaTeX

LaTeX template for diary, log book, or lab notebook for 2023

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diary2024inLaTeX

A diary or logbook with one tex file per day in LaTeX. Includes auto generated table of contents, index, and bibliography.

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Crystal improvement with Definitive Screening Designs (DSDs)

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dsw-2024-org-mode-init

Emacs init.el configuration file for org-mode demo at November 22 meeting of Oklahoma Data Science Workshop

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Slides from the Oklahoma Data Science Workshop talk about using GhostText to edit Jupyter and Colab notebooks.

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DSW24-org-mode-slides

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Script to facilitate the making of horizontal scripts

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My personal list of RSS feeds for elfeed.

⭐ 1 🌐 Public

emacs-learning-spiral-hydra

In line pop-up menus of GNU Emacs core commands that you are trying to master or thought you mastered.

⭐ 1 🌐 Public

emacs-simple-init-org

A simple approach to the configuration of Emacs via a org file that is easy to navigate.

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Voice In commands for use when writing about Emacs.

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emacs30macos13treesitter

Compile emacs30 on macOS 13.2 with support for using tree-sitter

⭐ 2 🌐 Public

emacs30ubuntu22

Protocol to install emacs30 on ubuntu 22.04 LTS with tree-sitter support.

⭐ 6 🌐 Public

emacs30venturatreesitterconfig

Configuration file for Emacs 30.0.5 with tree-sitter and combobulate for macOS

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Emacs configuration file for Emacs on the University of Oklahoma Supercomputing Center

⭐ 1 🌐 Public

EmacsATX4May2022

Brief introduction to functional programming in Emacs Lisp

⭐ 3 🌐 Public

emacsclient-custom-frames

Customized frames for instances of emacsclient instances.

⭐ 1 🌐 Public

export-select-bibtex-entries-el

Export from Emacs BibTeX entries selected by keywords in all or select fields.

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Gantt chart for planning projects, manuscripts, grant proposals, and so on.

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Notes for the jointprob group

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Links to journals of interest.

⭐ 1 🌐 Public

jupyter-atom-pymolpysnips

PyMOL Python snippet library to edit live Jupyter notebook cells with Atom using GhostText

⭐ 1 🌐 Public

jupyter-emacs-pymolpysnips

PyMOL Python snippet library to edit live Jupyter notebook cells with Emacs using GhostText

⭐ 1 🌐 Public

jupyter-neosnippets-pymolpysnips

PyMOL Python snippet library to edit live Jupyter notebook cells with vim or neovim using GhostText

⭐ 1 🌐 Public

jupyter-snipmate-pymolpysnips

PyMOL Python snippet library to edit live Jupyter notebook cells with vim or neovim using the snipmate plugin and the browser plugin GhostText

⭐ 1 🌐 Public

jupyter-st3-pymolpysnips

PyMOL Python snippet library to edit live Jupyter notebook cells with Sublime Text 3 using GhostText

⭐ 1 🌐 Public

jupyter-ultisnips-pymolpysnips

PyMOL Python snippet library to edit live Jupyter notebook cells with vim or neovim using the ultisnips plugin and the browser plugin GhostText

⭐ 1 🌐 Public

jupyter-voice-in

voice-triggered snippets for use in Jupyter notebooks with Voice In Plus

⭐ 1 🌐 Public

jupyter-vsc-pymolpysnips

PyMOL Python snippet library to edit live Jupyter notebook cells with Visual Studio Code using GhostText

⭐ 1 🌐 Public

jupyterlabcctbxsnips

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jupyterlabcctbxsnipsplus

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jupyterlabpymolpysnips

Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.

⭐ 25 🌐 Public

jupyterlabpymolpysnipsplus

jupyterlabpymolpysnipsplus

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jupyternbclassicpymolpysnips

PyMOL Python snippets for the Classic Jupyter Notebook.

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Emacs version 29 profile for use with LaTeX in academic writing.

⭐ 23 🌐 Public

latex-gloassaries-to-typst-gloassarium

Python script to convert LaTeX glossaries entries to Typst gloassarium entries

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LaTeX related voice commands for Voice In Plus

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LaTeX configuration file that works with Emacs28

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LaTex dominated configuration for Emacs 30

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LaTeXsnippetsInWebpages

LaTeXsnippetsInWebpages

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Tips for greater productivity with LaTeX

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Run say program in Emacs on Mac OS X to carry out Text-to-Speach.

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manuscript-template-bibtex-rmarkdown

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manuscriptInLaTeX

Template for the first submission of a manuscript

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manuscriptInOrg

Manuscript in org-mode

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manuscriptInTypst

Template for first submission of manuscript.

⭐ 2 🌐 Public

markdown-chat-to-org-mode

Convert downloaded chats from markdown to org

⭐ 2 🌐 Public

markdown-jupyter-voice-in

markdown snippets for Jupyter in Voice-In Plus

⭐ 1 🌐 Public